STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC09793.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
APC09794.1
Competence protein A.
  
 
 0.990
APC09792.1
Hypothetical protein.
  
 
 0.984
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor; Belongs to the bacterial secretin family.
  
 
 0.979
tcpT
Toxin coregulated pilus biosynthesis protein T.
  
 
 0.702
gspE
Putative type II secretion system protein E.
  
 
 0.702
mrcA
Penicillin-binding protein 1A.
       0.560
epsF
Type II secretion system protein F.
   
 
 0.518
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.