STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sicA_1Chaperone protein SicA. (161 aa)    
Predicted Functional Partners:
sseC
Secreted effector protein SseC.
  
  
 0.896
yscJ
Yop proteins translocation lipoprotein J precursor.
 
  
 0.884
prgK
Lipoprotein PrgK precursor.
 
  
 0.842
sseD
Secreted effector protein SseD.
  
  
 0.814
fliQ_2
Flagellar biosynthetic protein FliQ.
 
  
 0.812
spiA
Type III secretion system outer membrane protein SpiA precursor.
 
  
 0.804
APC09805.1
Hypothetical protein.
       0.773
sicA_2
Chaperone protein SicA.
  
     0.772
mxiD
Outer membrane protein MxiD precursor.
 
  
 0.768
ssaV
Secretion system apparatus protein SsaV.
 
  
 0.741
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.