STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virFVirulence regulon transcriptional activator VirF. (242 aa)    
Predicted Functional Partners:
yscF
Yop proteins translocation protein F.
       0.773
APC09812.1
Hypothetical protein.
       0.773
rob_2
Right origin-binding protein.
  
     0.746
tetD_2
Transposon Tn10 TetD protein.
  
     0.743
yscJ
Yop proteins translocation lipoprotein J precursor.
 
  
 0.741
ydeO
HTH-type transcriptional regulator YdeO.
  
     0.730
tetD_1
Transposon Tn10 TetD protein.
  
     0.727
rob_1
Right origin-binding protein.
  
     0.720
rob_3
Right origin-binding protein.
  
     0.708
APC09813.1
Type III secretion needle MxiH like protein.
       0.645
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.