Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC09812.1Hypothetical protein. (89 aa)    
Predicted Functional Partners:
yscF
Yop proteins translocation protein F.
  
  
 0.936
virF
Virulence regulon transcriptional activator VirF.
       0.773
APC09815.1
Hypothetical protein.
       0.672
APC09816.1
HrpE/YscL/FliH and V-type ATPase subunit E.
       0.672
APC09817.1
HrpJ-like domain protein.
       0.672
APC09813.1
Type III secretion needle MxiH like protein.
       0.666
yscJ
Yop proteins translocation lipoprotein J precursor.
  
  
 0.666
sseB
Secreted effector protein SseB.
  
    0.489
APC09818.1
Hypothetical protein.
  
    0.481
ssaV
Secretion system apparatus protein SsaV.
       0.442
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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