STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC09813.1Type III secretion needle MxiH like protein. (113 aa)    
Predicted Functional Partners:
APC09815.1
Hypothetical protein.
       0.791
APC09817.1
HrpJ-like domain protein.
       0.789
APC09816.1
HrpE/YscL/FliH and V-type ATPase subunit E.
       0.788
yscJ
Yop proteins translocation lipoprotein J precursor.
       0.782
yscF
Yop proteins translocation protein F.
       0.669
APC09812.1
Hypothetical protein.
       0.664
virF
Virulence regulon transcriptional activator VirF.
       0.645
APC09818.1
Hypothetical protein.
       0.507
ssaV
Secretion system apparatus protein SsaV.
       0.507
yscN
Putative ATP synthase YscN.
       0.507
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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