Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC09815.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
APC09817.1
HrpJ-like domain protein.
  
    0.921
yscJ
Yop proteins translocation lipoprotein J precursor.
  
    0.844
APC09816.1
HrpE/YscL/FliH and V-type ATPase subunit E.
       0.799
APC09813.1
Type III secretion needle MxiH like protein.
       0.790
yscF
Yop proteins translocation protein F.
       0.686
APC09812.1
Hypothetical protein.
       0.672
virF
Virulence regulon transcriptional activator VirF.
       0.645
ssaV
Secretion system apparatus protein SsaV.
  
    0.603
sseD
Secreted effector protein SseD.
  
    0.581
sseB
Secreted effector protein SseB.
  
    0.578
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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