Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC09821.1Hypothetical protein. (126 aa)    
Predicted Functional Partners:
APC09818.1
Hypothetical protein.
       0.789
APC09823.1
Type III secretion system protein SsaQ.
       0.789
ssaV
Secretion system apparatus protein SsaV.
       0.773
yscN
Putative ATP synthase YscN.
       0.773
APC09822.1
Hypothetical protein.
       0.773
APC09813.1
Type III secretion needle MxiH like protein.
       0.507
yscJ
Yop proteins translocation lipoprotein J precursor.
       0.507
APC09815.1
Hypothetical protein.
       0.507
APC09816.1
HrpE/YscL/FliH and V-type ATPase subunit E.
       0.507
APC09817.1
HrpJ-like domain protein.
       0.507
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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