STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yscUYop proteins translocation protein U. (354 aa)    
Predicted Functional Partners:
APC09826.1
Flagellar biosynthesis protein FliR.
 
  
 0.986
fliP_1
Flagellar biosynthetic protein FliP precursor.
 
  
 0.984
fliQ_1
Flagellar biosynthetic protein FliQ.
 
  
 0.981
fliP_2
Flagellar biosynthetic protein FliP precursor.
 
  
 0.949
APC09922.1
Flagellar biosynthesis protein FliR.
 
  
 0.940
ssaV
Secretion system apparatus protein SsaV.
 
  
 0.934
invA
Invasion protein InvA.
 
  
 0.934
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.875
fliQ_2
Flagellar biosynthetic protein FliQ.
 
  
 0.868
yscJ
Yop proteins translocation lipoprotein J precursor.
 
  
 0.849
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.