STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spiAType III secretion system outer membrane protein SpiA precursor. (497 aa)    
Predicted Functional Partners:
yscJ
Yop proteins translocation lipoprotein J precursor.
 
 
 0.922
prgK
Lipoprotein PrgK precursor.
 
 
 0.915
fliQ_2
Flagellar biosynthetic protein FliQ.
 
 
 0.906
APC09832.1
Hypothetical protein.
  
  
 0.898
APC09826.1
Flagellar biosynthesis protein FliR.
 
 
 0.858
spaK_1
Surface presentation of antigens protein SpaK.
  
  
 0.830
fliP_2
Flagellar biosynthetic protein FliP precursor.
 
 
 0.820
yscU
Yop proteins translocation protein U.
 
  
 0.815
sicA_2
Chaperone protein SicA.
 
    0.810
sicA_1
Chaperone protein SicA.
 
    0.809
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.