STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC09910.1Type III secretion system protein PrgH-EprH (PrgH). (392 aa)    
Predicted Functional Partners:
APC09908.1
Type III secretion needle MxiH like protein.
  
 
 0.946
prgK
Lipoprotein PrgK precursor.
  
 
 0.910
mxiD
Outer membrane protein MxiD precursor.
  
 
 0.895
APC09913.1
HrpJ-like domain protein.
  
  
 0.878
spaS
Surface presentation of antigens protein SpaS.
  
 
 0.871
sipB
Cell invasion protein SipB.
  
  
 0.817
yscJ
Yop proteins translocation lipoprotein J precursor.
  
 
 0.807
spiA
Type III secretion system outer membrane protein SpiA precursor.
  
 
 0.801
APC09927.1
Invasion plasmid antigen IpaD.
  
  
 0.795
fliP_2
Flagellar biosynthetic protein FliP precursor.
  
 
 0.775
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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