STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
invFInvasion protein InvF. (259 aa)    
Predicted Functional Partners:
mxiD
Outer membrane protein MxiD precursor.
 
  
 0.849
APC09913.1
HrpJ-like domain protein.
  
  
 0.797
APC09919.1
Type III secretion system protein SpaO.
 
    0.776
invA
Invasion protein InvA.
     
 0.718
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.639
sicA_2
Chaperone protein SicA.
 
   
 0.622
fliQ_2
Flagellar biosynthetic protein FliQ.
 
     0.583
prgK
Lipoprotein PrgK precursor.
 
  
 0.580
APC09922.1
Flagellar biosynthesis protein FliR.
 
     0.578
spaK_2
Surface presentation of antigens protein SpaK.
  
    0.573
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.