STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC09913.1HrpJ-like domain protein. (363 aa)    
Predicted Functional Partners:
APC09910.1
Type III secretion system protein PrgH-EprH (PrgH).
  
  
 0.878
spaS
Surface presentation of antigens protein SpaS.
  
  
 0.871
mxiD
Outer membrane protein MxiD precursor.
  
  
 0.844
invA
Invasion protein InvA.
  
  
 0.807
invF
Invasion protein InvF.
  
  
 0.797
spaK_2
Surface presentation of antigens protein SpaK.
  
  
 0.733
fliP_2
Flagellar biosynthetic protein FliP precursor.
  
  
 0.696
APC09908.1
Type III secretion needle MxiH like protein.
  
  
 0.638
APC09919.1
Type III secretion system protein SpaO.
  
  
 0.618
spaL
Putative ATP synthase SpaL.
  
  
 0.604
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.