Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC09913.1HrpJ-like domain protein. (363 aa)    
Predicted Functional Partners:
spaS
Surface presentation of antigens protein SpaS.
  
  
 0.958
APC09910.1
Type III secretion system protein PrgH-EprH (PrgH).
  
  
 0.955
mxiD
Outer membrane protein MxiD precursor.
  
  
 0.866
invA
Invasion protein InvA.
  
  
 0.836
invF
Invasion protein InvF.
  
  
 0.813
fliP_2
Flagellar biosynthetic protein FliP precursor.
  
  
 0.738
spaK_2
Surface presentation of antigens protein SpaK.
  
  
 0.732
APC09919.1
Type III secretion system protein SpaO.
  
  
 0.670
APC09908.1
Type III secretion needle MxiH like protein.
  
  
 0.663
spaL
Putative ATP synthase SpaL.
  
  
 0.663
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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