STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spaK_2Surface presentation of antigens protein SpaK. (135 aa)    
Predicted Functional Partners:
fliP_2
Flagellar biosynthetic protein FliP precursor.
  
  
 0.825
APC09908.1
Type III secretion needle MxiH like protein.
  
    0.822
spaL
Putative ATP synthase SpaL.
  
  
 0.778
APC09910.1
Type III secretion system protein PrgH-EprH (PrgH).
  
    0.772
APC09922.1
Flagellar biosynthesis protein FliR.
  
    0.771
APC09919.1
Type III secretion system protein SpaO.
  
  
 0.756
APC09917.1
Hypothetical protein.
       0.736
APC09918.1
Hypothetical protein.
       0.736
APC09913.1
HrpJ-like domain protein.
  
  
 0.732
fliQ_2
Flagellar biosynthetic protein FliQ.
  
    0.713
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.