Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fliP_2Flagellar biosynthetic protein FliP precursor. (221 aa)    
Predicted Functional Partners:
APC09922.1
Flagellar biosynthesis protein FliR.
 
 
 0.995
fliQ_2
Flagellar biosynthetic protein FliQ.
 
 
 0.993
spaS
Surface presentation of antigens protein SpaS.
 
 
 0.987
APC09826.1
Flagellar biosynthesis protein FliR.
 
 
 0.984
fliQ_1
Flagellar biosynthetic protein FliQ.
 
 
 0.983
invA
Invasion protein InvA.
 
 
 0.973
spaL
Putative ATP synthase SpaL.
 
  
 0.965
mxiD
Outer membrane protein MxiD precursor.
 
 
 0.963
prgK
Lipoprotein PrgK precursor.
 
 
 0.961
yscU
Yop proteins translocation protein U.
 
  
 0.949
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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