STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliP_2Flagellar biosynthetic protein FliP precursor. (221 aa)    
Predicted Functional Partners:
APC09922.1
Flagellar biosynthesis protein FliR.
 
 
 0.994
fliQ_2
Flagellar biosynthetic protein FliQ.
 
 
 0.989
APC09826.1
Flagellar biosynthesis protein FliR.
 
 
 0.979
fliQ_1
Flagellar biosynthetic protein FliQ.
 
 
 0.973
invA
Invasion protein InvA.
 
 
 0.971
spaL
Putative ATP synthase SpaL.
 
  
 0.962
spaS
Surface presentation of antigens protein SpaS.
 
 
 0.958
ssaV
Secretion system apparatus protein SsaV.
 
 
 0.937
yscU
Yop proteins translocation protein U.
 
  
 0.933
mxiD
Outer membrane protein MxiD precursor.
 
 
 0.919
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.