STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sipBCell invasion protein SipB. (737 aa)    
Predicted Functional Partners:
APC09927.1
Invasion plasmid antigen IpaD.
  
  
 0.985
sicA_2
Chaperone protein SicA.
 
  
 0.908
prgK
Lipoprotein PrgK precursor.
 
  
 0.843
spaS
Surface presentation of antigens protein SpaS.
 
  
 0.820
APC09910.1
Type III secretion system protein PrgH-EprH (PrgH).
  
  
 0.817
APC09926.1
Salmonella-Shigella invasin protein C (IpaC_SipC).
       0.723
invA
Invasion protein InvA.
 
  
 0.650
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
     
 0.642
acpP_1
Acyl carrier protein.
  
   0.614
mxiD
Outer membrane protein MxiD precursor.
 
  
 0.611
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.