Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APC09927.1Invasion plasmid antigen IpaD. (364 aa)    
Predicted Functional Partners:
sipB
Cell invasion protein SipB.
  
  
 0.992
APC09910.1
Type III secretion system protein PrgH-EprH (PrgH).
  
  
 0.894
APC09926.1
Salmonella-Shigella invasin protein C (IpaC_SipC).
     
 0.772
sicA_2
Chaperone protein SicA.
     
 0.709
acpP_1
Acyl carrier protein.
  
    0.680
spaS
Surface presentation of antigens protein SpaS.
  
  
 0.667
APC09913.1
HrpJ-like domain protein.
  
  
 0.626
APC09928.1
Hypothetical protein.
       0.620
APC09919.1
Type III secretion system protein SpaO.
  
  
 0.589
spaK_2
Surface presentation of antigens protein SpaK.
  
    0.581
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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