STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA_1Colicin I receptor precursor. (383 aa)    
Predicted Functional Partners:
cirA_2
Colicin I receptor precursor.
     0.994
besA
Ferri-bacillibactin esterase BesA.
 
  
 0.790
fhuA
Ferrichrome-iron receptor precursor.
  
  
 0.600
fcuA
Ferrichrome receptor FcuA precursor.
  
  
 0.581
APC12026.1
Transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.535
APC10348.1
Fec operon regulator FecR.
 
  
 0.454
fes
Enterochelin esterase.
 
  
 0.432
btuB_2
Vitamin B12 transporter BtuB.
  
  
 0.419
fhuC_1
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
 
  
 0.400
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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