STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA_2Colicin I receptor precursor. (310 aa)    
Predicted Functional Partners:
cirA_1
Colicin I receptor precursor.
     0.994
besA
Ferri-bacillibactin esterase BesA.
 
  
 0.810
fhuA
Ferrichrome-iron receptor precursor.
  
  
 0.706
fcuA
Ferrichrome receptor FcuA precursor.
  
  
 0.637
APC12026.1
Transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.582
btuB_2
Vitamin B12 transporter BtuB.
  
  
 0.434
iutA
Ferric aerobactin receptor precursor.
  
  
 0.426
APC10348.1
Fec operon regulator FecR.
 
  
 0.411
fhuC_1
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
 
  
 0.402
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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