Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cirA_2Colicin I receptor precursor. (310 aa)    
Predicted Functional Partners:
cirA_1
Colicin I receptor precursor.
     0.994
besA
Ferri-bacillibactin esterase BesA.
 
  
 0.812
APC12026.1
Transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.811
fhuA
Ferrichrome-iron receptor precursor.
  
  
 0.708
fcuA
Ferrichrome receptor FcuA precursor.
  
  
 0.671
APC10350.1
Transport protein TonB.
  
 
 0.566
APC12109.1
Gram-negative bacterial tonB protein.
  
 
 0.566
iutA
Ferric aerobactin receptor precursor.
  
  
 0.402
APC10348.1
Fec operon regulator FecR.
 
  
 0.400
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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