Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
emrB_2Multidrug export protein EmrB; Belongs to the major facilitator superfamily. (507 aa)    
Predicted Functional Partners:
emrA_1
Multidrug export protein EmrA.
 
 
 0.977
emrA_2
Multidrug export protein EmrA.
 
 
 0.922
emrK_1
Putative multidrug resistance protein EmrK.
 
 
 0.839
emrB_1
Multidrug export protein EmrB.
  
     0.645
tolC
Outer membrane protein TolC precursor.
  
 
 0.607
mdtN_1
Multidrug resistance protein MdtN.
  
 
 0.585
aaeA
P-hydroxybenzoic acid efflux pump subunit AaeA.
  
 
 0.565
acrA
Multidrug efflux pump subunit AcrA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   
 0.477
hlyD
Hemolysin secretion protein D, chromosomal.
   
 
 0.438
marR
Multiple antibiotic resistance protein MarR.
     
 0.436
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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