STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDPutative 1,2-phenylacetyl-CoA epoxidase, subunit D. (169 aa)    
Predicted Functional Partners:
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
 
 
 0.998
paaC
1,2-phenylacetyl-CoA epoxidase, subunit C.
 
 
 0.998
paaB
1,2-phenylacetyl-CoA epoxidase, subunit B.
 
 
 0.998
paaA
1,2-phenylacetyl-CoA epoxidase, subunit A.
 
 
 0.998
paaI
Acyl-coenzyme A thioesterase PaaI.
 
 
 0.996
paaG
1,2-epoxyphenylacetyl-CoA isomerase.
 
 
 0.995
paaK
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.986
paaZ
Bifunctional protein PaaZ.
 
  
 0.947
paaH
3-hydroxyadipyl-CoA dehydrogenase.
 
  
 0.895
paaX
Transcriptional repressor PaaX.
 
   
 0.851
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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