STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC09979.1DNA utilization protein GntX. (227 aa)    
Predicted Functional Partners:
dprA
Hypothetical protein.
 
 
 0.919
APC11004.1
ComEC family competence protein.
 
  
 0.868
comM
Competence protein ComM.
 
  
 0.848
APC13373.1
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.715
tyrA
T-protein.
  
  
 0.696
APC14061.1
Hypothetical protein; Belongs to the UPF0758 family.
 
    0.681
APC10603.1
Hypothetical protein; Belongs to the UPF0758 family.
 
    0.680
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
     
 0.669
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
  
  
 0.653
arcB_2
Aerobic respiration control sensor protein ArcB.
  
  
 0.631
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.