Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arcB_1 | arcB_2 | RB151_001130 | RB151_037310 | Aerobic respiration control sensor protein ArcB. | Aerobic respiration control sensor protein ArcB. | 0.989 |
arcB_1 | cusS | RB151_001130 | RB151_006610 | Aerobic respiration control sensor protein ArcB. | Sensor kinase CusS; Member of a two-component regulatory system. | 0.752 |
arcB_1 | envZ_2 | RB151_001130 | RB151_002730 | Aerobic respiration control sensor protein ArcB. | Osmolarity sensor protein EnvZ. | 0.815 |
arcB_1 | ompR | RB151_001130 | RB151_002710 | Aerobic respiration control sensor protein ArcB. | Transcriptional regulatory protein OmpR. | 0.750 |
arcB_1 | phoR | RB151_001130 | RB151_007060 | Aerobic respiration control sensor protein ArcB. | Phosphate regulon sensor protein PhoR. | 0.541 |
arcB_1 | rcsC | RB151_001130 | RB151_026400 | Aerobic respiration control sensor protein ArcB. | Sensor histidine kinase RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.850 |
arcB_1 | rssA | RB151_001130 | RB151_026170 | Aerobic respiration control sensor protein ArcB. | Swarming motility regulation sensor protein RssA. | 0.460 |
arcB_2 | arcB_1 | RB151_037310 | RB151_001130 | Aerobic respiration control sensor protein ArcB. | Aerobic respiration control sensor protein ArcB. | 0.989 |
arcB_2 | cpxA | RB151_037310 | RB151_043950 | Aerobic respiration control sensor protein ArcB. | Sensor protein CpxA. | 0.967 |
arcB_2 | cusS | RB151_037310 | RB151_006610 | Aerobic respiration control sensor protein ArcB. | Sensor kinase CusS; Member of a two-component regulatory system. | 0.696 |
arcB_2 | envZ_1 | RB151_037310 | RB151_002720 | Aerobic respiration control sensor protein ArcB. | Osmolarity sensor protein EnvZ. | 0.968 |
arcB_2 | envZ_2 | RB151_037310 | RB151_002730 | Aerobic respiration control sensor protein ArcB. | Osmolarity sensor protein EnvZ. | 0.966 |
arcB_2 | nuoC | RB151_037310 | RB151_026700 | Aerobic respiration control sensor protein ArcB. | NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.807 |
arcB_2 | ompR | RB151_037310 | RB151_002710 | Aerobic respiration control sensor protein ArcB. | Transcriptional regulatory protein OmpR. | 0.923 |
arcB_2 | phoR | RB151_037310 | RB151_007060 | Aerobic respiration control sensor protein ArcB. | Phosphate regulon sensor protein PhoR. | 0.717 |
arcB_2 | rcsC | RB151_037310 | RB151_026400 | Aerobic respiration control sensor protein ArcB. | Sensor histidine kinase RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.989 |
arcB_2 | rssA | RB151_037310 | RB151_026170 | Aerobic respiration control sensor protein ArcB. | Swarming motility regulation sensor protein RssA. | 0.965 |
cpxA | arcB_2 | RB151_043950 | RB151_037310 | Sensor protein CpxA. | Aerobic respiration control sensor protein ArcB. | 0.967 |
cpxA | ompR | RB151_043950 | RB151_002710 | Sensor protein CpxA. | Transcriptional regulatory protein OmpR. | 0.805 |
cpxA | rcsC | RB151_043950 | RB151_026400 | Sensor protein CpxA. | Sensor histidine kinase RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.426 |
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