STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimA_1Type-1 fimbrial protein, A chain precursor. (322 aa)    
Predicted Functional Partners:
APC10006.1
Helix-turn-helix domain protein.
       0.773
focC
Chaperone protein FocC precursor.
  
   0.702
elfC_2
Putative outer membrane usher protein ElfC precursor.
  
 
 0.663
mrpA_3
Major MR/P fimbria protein precursor.
       0.617
sfaS
S-fimbrial adhesin protein SfaS precursor.
       0.595
fimA_2
Type-1 fimbrial protein, A chain precursor.
      
0.591
APC10004.1
Helix-turn-helix domain protein.
       0.442
fimA_3
Type-1 fimbrial protein, A chain precursor.
     
 0.415
papD_1
Chaperone protein PapD precursor.
  
   0.405
papD_2
Chaperone protein PapD precursor.
  
   0.405
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.