STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10036.1Translocation protein TolB. (435 aa)    
Predicted Functional Partners:
APC10037.1
Hypothetical protein.
  
   
 0.799
rcsF
Outer membrane lipoprotein RcsF precursor; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.770
APC13086.1
Bacterial chaperone lipoprotein (PulS_OutS).
  
     0.766
APC11804.1
Hypothetical protein.
 
     0.764
APC11576.1
Hypothetical protein.
  
     0.757
APC10654.1
Hypothetical protein.
  
     0.755
APC13480.1
Hypothetical protein.
  
     0.752
APC13961.1
Hypothetical protein.
  
     0.741
ycdY
Chaperone protein YcdY.
  
     0.733
APC12085.1
Hypothetical protein; Belongs to the UPF0181 family.
  
     0.724
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.