STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10051.1D-alanyl-D-alanine carboxypeptidase precursor. (335 aa)    
Predicted Functional Partners:
cobB
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
     
 0.679
rutR
HTH-type transcriptional regulator RutR.
      
 0.667
gltR_1
HTH-type transcriptional regulator GltR.
       0.658
ampH
D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH precursor.
  
     0.630
ampC
Beta-lactamase.
  
     0.544
cocE
Cocaine esterase.
 
   
 0.518
APC10053.1
Nitronate monooxygenase.
       0.491
ybbD
Putative lipoprotein YbbD precursor.
 
  
 0.457
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.