Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhjDInner membrane protein YhjD. (330 aa)    
Predicted Functional Partners:
APC11804.1
Hypothetical protein.
 
     0.703
APC13357.1
Hypothetical protein.
  
     0.684
APC11568.1
Branched-chain amino acid transport protein (AzlD).
  
     0.636
APC10654.1
Hypothetical protein.
  
     0.627
APC10037.1
Hypothetical protein.
  
     0.613
APC12079.1
Hypothetical protein.
  
     0.612
APC13480.1
Hypothetical protein.
  
     0.610
igaA
Intracellular growth attenuator protein igaA.
  
     0.596
ycdY
Chaperone protein YcdY.
  
     0.596
APC11576.1
Hypothetical protein.
  
     0.595
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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