Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC10055.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
elaB
Hypothetical protein.
 
  
 0.966
APC10477.1
Hypothetical protein.
  
    0.796
yqjE
Inner membrane protein YqjE.
 
  
 0.734
osmY_1
Osmotically-inducible protein Y precursor.
   
    0.653
dps
DNA protection during starvation protein; Belongs to the Dps family.
   
    0.587
APC13357.1
Hypothetical protein.
 
  
 0.582
osmY_2
Osmotically-inducible protein Y precursor.
   
    0.570
papC_7
Outer membrane usher protein PapC precursor.
  
     0.539
papC_3
Outer membrane usher protein PapC precursor.
  
     0.530
yhjD
Inner membrane protein YhjD.
 
     0.529
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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