Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
oprBPorin B precursor. (434 aa)    
Predicted Functional Partners:
aaeA
P-hydroxybenzoic acid efflux pump subunit AaeA.
  
     0.554
aaeB_2
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
   
 0.510
APC10059.1
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor.
       0.487
fruA_1
PTS system fructose-specific EIIBC component.
 
   
 0.477
fruA_2
PTS system fructose-specific EIIBC component.
 
   
 0.475
bglB_1
6-phospho-beta-glucosidase BglB.
       0.459
fcuA
Ferrichrome receptor FcuA precursor.
  
     0.440
APC11777.1
Gluconate 2-dehydrogenase subunit 3 precursor.
  
     0.439
APC13463.1
Cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.425
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
       0.420
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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