STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprBPorin B precursor. (434 aa)    
Predicted Functional Partners:
APC10634.1
Polysaccharide biosynthesis/export protein.
  
  
 0.634
APC14029.1
Polysaccharide biosynthesis/export protein.
  
  
 0.631
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
     
 0.588
ompA
Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
     
 0.576
aaeA
P-hydroxybenzoic acid efflux pump subunit AaeA.
  
     0.554
btuB_3
Vitamin B12 transporter BtuB precursor; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.
     
  0.540
aaeB_2
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.497
APC10059.1
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor.
       0.487
bglB_1
6-phospho-beta-glucosidase BglB.
       0.459
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
       0.447
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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