Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bglGCryptic beta-glucoside bgl operon antiterminator. (254 aa)    
Predicted Functional Partners:
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
 
 0.961
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
 
 0.907
APC13430.1
PTS system EIIBC component.
 
 
 0.876
bglB_2
6-phospho-beta-glucosidase BglB; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.863
bglB_1
6-phospho-beta-glucosidase BglB.
 
  
 0.857
APC10886.1
PTS system EIIBC component.
 
 
 0.796
murP
PTS system N-acetylmuramic acid-specific EIIBC component.
 
 
 0.779
bglH
Aryl-phospho-beta-D-glucosidase BglH.
 
  
 0.756
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
      
 0.754
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
      
 0.732
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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