Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sugBTrehalose transport system permease protein SugB. (300 aa)    
Predicted Functional Partners:
potH
Putrescine transport system permease protein PotH.
 
 0.998
sbp_1
Sulfate-binding protein precursor.
 
 
 0.995
potA_1
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
 0.994
APC10127.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
    0.965
APC10123.1
Haloacid dehalogenase-like hydrolase.
 
     0.832
phnR
Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons.
 
  
 0.439
ydcV
Inner membrane ABC transporter permease protein YdcV.
 
  
 0.434
APC10122.1
Hypothetical protein.
       0.417
nudC
NADH pyrophosphatase; Belongs to the Nudix hydrolase family. NudC subfamily.
       0.407
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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