STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuB_1Vitamin B12 transporter BtuB precursor. (664 aa)    
Predicted Functional Partners:
btuF_1
Vitamin B12-binding protein.
 
    0.838
APC10172.1
Putative ABC transporter ATP-binding protein.
 
  
 0.770
APC10171.1
Hypothetical protein.
 
     0.760
APC10173.1
Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.682
nadC_1
Putative nicotinate-nucleotide pyrophosphorylase [carboxylating]; Belongs to the NadC/ModD family.
 
     0.575
APC14047.1
Hypothetical protein.
  
     0.553
hdeD
Acid-resistance membrane protein.
  
     0.532
fcuA
Ferrichrome receptor FcuA precursor.
  
  
 0.508
APC10350.1
Transport protein TonB.
 
 
 0.479
APC10348.1
Fec operon regulator FecR.
 
  
 0.477
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (26%) [HD]