STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10178.1Hypothetical protein. (408 aa)    
Predicted Functional Partners:
APC10179.1
Hypothetical protein.
 
     0.952
patA
Peptidoglycan O-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
 
    0.931
tetR_2
Tetracycline repressor protein class H.
  
     0.697
APC12870.1
Hypothetical protein; P22_AR N-terminal domain.
  
     0.561
tetR_1
Tetracycline repressor protein class A; From transposon 1721.
  
     0.551
APC12892.1
Hypothetical protein.
 
     0.519
APC12555.1
Hypothetical protein.
  
     0.503
APC12545.1
Hypothetical protein.
  
     0.462
efeB
Deferrochelatase/peroxidase EfeB precursor; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
     0.461
APC12585.1
Hypothetical protein.
 
     0.453
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.