Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxRRedox-sensitive transcriptional activator SoxR. (165 aa)    
Predicted Functional Partners:
hmrR
HTH-type transcriptional regulator HmrR.
  
   
 0.740
cueR_1
HTH-type transcriptional regulator CueR.
  
   
 0.598
APC10196.1
DoxX.
     
 0.587
mdtA_1
Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.558
acrB_1
Multidrug efflux pump subunit AcrB.
     
 0.540
marR
Multiple antibiotic resistance protein MarR.
  
   
 0.518
zntA
Lead, cadmium, zinc and mercury-transporting ATPase.
  
  
 0.492
bepE_1
Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.484
sinR
HTH-type transcriptional regulator SinR.
 
  
 0.481
APC11422.1
Hypothetical protein.
  
     0.480
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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