STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carA2Zeta-carotene-forming phytoene desaturase. (539 aa)    
Predicted Functional Partners:
kynB
Kynurenine formamidase.
 
   
 0.938
APC13561.1
PAP2 superfamily protein.
  
  
 0.907
styA
Styrene monooxygenase StyA.
 
  
 0.883
cpnA
Cyclopentanol dehydrogenase.
 
   
 0.828
APC10200.1
P-hydroxyphenylacetate 3-hydroxylase, reductase component.
 
     0.802
APC10206.1
Putative indolepyruvate oxidoreductase subunit B.
 
     0.744
APC10205.1
Indolepyruvate ferredoxin oxidoreductase.
 
     0.729
APC10203.1
Hypothetical protein.
 
     0.721
nagI
Gentisate 1,2-dioxygenase.
  
     0.640
APC10207.1
1,4-dihydroxy-2-naphthoyl-CoA hydrolase.
 
     0.632
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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