STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcB_1RNA-splicing ligase RtcB. (408 aa)    
Predicted Functional Partners:
APC10227.1
SPFH domain / Band 7 family protein.
 
 
 0.943
APC10225.1
Putative nucleotidyltransferase.
 
    0.939
vnfA
Nitrogen fixation protein VnfA.
  
     0.729
prfB_2
Peptide chain release factor 2.
 
  
 0.472
ybiA
Swarming motility protein YbiA.
 
     0.450
APC13561.1
PAP2 superfamily protein.
  
     0.432
ytpA
Phospholipase YtpA.
 
     0.413
APC13410.1
Low molecular weight phosphotyrosine protein phosphatase.
 
     0.401
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.