Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC10231.1Invasin. (762 aa)    
Predicted Functional Partners:
APC10230.1
Invasin.
 
  
 
0.948
APC10905.1
Hypothetical protein.
  
 
 0.936
APC10907.1
Hypothetical protein.
  
 
 0.936
APC10229.1
Invasin.
 
  
 
0.906
smc
Chromosome partition protein Smc.
   
 
 0.738
APC13480.1
Hypothetical protein.
  
     0.668
ftsK
DNA translocase FtsK.
    
 
 0.655
rcsF
Outer membrane lipoprotein RcsF precursor; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.649
APC12453.1
Enhanced serine sensitivity protein SseB.
 
 
 
 0.643
ymoA
Modulating protein YmoA.
  
   
 0.633
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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