Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APC10254.1Site-specific tyrosine recombinase XerC. (393 aa)    
Predicted Functional Partners:
APC10255.1
Phage integrase family protein.
 
   
 0.963
APC10256.1
Hypothetical protein.
     
 0.847
APC10257.1
Hypothetical protein.
       0.789
APC10258.1
Hypothetical protein.
       0.773
APC10259.1
Hypothetical protein.
       0.773
APC11415.1
Transposase DDE domain protein.
  
     0.680
APC11478.1
RecT family protein.
  
     0.669
APC11282.1
Hypothetical protein.
  
     0.663
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
  
     0.594
traN
Conjugal transfer mating pair stabilization protein TraN.
  
     0.587
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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