Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hgd2-(hydroxymethyl)glutarate dehydrogenase. (302 aa)    
Predicted Functional Partners:
APC10277.1
Hypothetical protein.
 
  
 0.964
ygbM
Putative hydroxypyruvate isomerase YgbM; Belongs to the hyi family.
  
 0.957
fucA_1
L-fuculose phosphate aldolase.
 
  
 0.898
APC10281.1
Putative epimerase/dehydratase.
 
  
 0.785
gatY
D-tagatose-1,6-bisphosphate aldolase subunit GatY.
 
  
 0.735
glcR_1
HTH-type transcriptional repressor GlcR.
     
 0.732
paaG
1,2-epoxyphenylacetyl-CoA isomerase.
  
 
 0.610
mmsA
Methylmalonate-semialdehyde dehydrogenase [acylating].
 
 
 0.606
idnT
Gnt-II system L-idonate transporter.
     
 0.582
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.562
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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