STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygbMPutative hydroxypyruvate isomerase YgbM; Belongs to the hyi family. (259 aa)    
Predicted Functional Partners:
hgd
2-(hydroxymethyl)glutarate dehydrogenase.
  
 0.939
APC10277.1
Hypothetical protein.
 
  
 0.928
fucA_1
L-fuculose phosphate aldolase.
 
  
 0.874
glcR_1
HTH-type transcriptional repressor GlcR.
 
    0.792
APC10281.1
Putative epimerase/dehydratase.
 
    0.724
idnT
Gnt-II system L-idonate transporter.
       0.576
APC11528.1
Hypothetical protein.
 
  
 0.425
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.