Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ygbMPutative hydroxypyruvate isomerase YgbM; Belongs to the hyi family. (259 aa)    
Predicted Functional Partners:
hgd
2-(hydroxymethyl)glutarate dehydrogenase.
  
 0.957
APC10277.1
Hypothetical protein.
 
  
 0.952
fucA_1
L-fuculose phosphate aldolase.
 
  
 0.878
glcR_1
HTH-type transcriptional repressor GlcR.
 
   
 0.795
APC10281.1
Putative epimerase/dehydratase.
 
    0.750
idnT
Gnt-II system L-idonate transporter.
       0.571
APC11528.1
Hypothetical protein.
 
  
 0.426
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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