Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
glcR_1HTH-type transcriptional repressor GlcR. (255 aa)    
Predicted Functional Partners:
ygbM
Putative hydroxypyruvate isomerase YgbM; Belongs to the hyi family.
 
   
 0.795
APC10277.1
Hypothetical protein.
 
   
 0.772
fucA_1
L-fuculose phosphate aldolase.
     
 0.735
hgd
2-(hydroxymethyl)glutarate dehydrogenase.
     
 0.732
APC10281.1
Putative epimerase/dehydratase.
       0.590
fruA_2
PTS system fructose-specific EIIBC component.
 
  
 0.586
fruA_1
PTS system fructose-specific EIIBC component.
 
  
 0.585
idnT
Gnt-II system L-idonate transporter.
       0.576
ppnK_2
Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.504
nudC
NADH pyrophosphatase; Belongs to the Nudix hydrolase family. NudC subfamily.
     
  0.500
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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