STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnTGnt-II system L-idonate transporter. (458 aa)    
Predicted Functional Partners:
APC10281.1
Putative epimerase/dehydratase.
  
    0.776
APC10277.1
Hypothetical protein.
 
   
 0.621
hgd
2-(hydroxymethyl)glutarate dehydrogenase.
     
 0.584
ygbM
Putative hydroxypyruvate isomerase YgbM; Belongs to the hyi family.
       0.576
glcR_1
HTH-type transcriptional repressor GlcR.
       0.576
fucA_1
L-fuculose phosphate aldolase.
       0.553
glxK
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.502
gntK
Thermoresistant gluconokinase.
 
  
 0.484
APC11528.1
Hypothetical protein.
 
     0.441
udp
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family.
       0.408
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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