STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fre_1NAD(P)H-flavin reductase. (125 aa)    
Predicted Functional Partners:
fre_2
NAD(P)H-flavin reductase.
     0.989
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.943
yigB
Flavin mononucleotide phosphatase YigB.
 
 
  0.913
hpaC
4-hydroxyphenylacetate 3-monooxygenase reductase component.
  
 
  0.912
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
  0.905
ribC
Riboflavin synthase.
    
  0.901
aphA
Class B acid phosphatase precursor; Belongs to the class B bacterial acid phosphatase family.
     
  0.900
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
  
    0.845
fadH
2,4-dienoyl-CoA reductase [NADPH].
  
 
 0.814
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
 
 0.788
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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