STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narL_1Nitrate/nitrite response regulator protein NarL. (218 aa)    
Predicted Functional Partners:
narX_1
Nitrate/nitrite sensor protein NarX.
 
 0.995
narX_2
Nitrate/nitrite sensor protein NarX.
 
 0.983
narL_2
Nitrate/nitrite response regulator protein NarL.
  
  
 
0.900
arcB_2
Aerobic respiration control sensor protein ArcB.
  
 
 0.755
liaS
Sensor histidine kinase LiaS.
 
 
   0.749
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 
 0.520
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
       0.464
phoP
Virulence transcriptional regulatory protein PhoP.
  
 
 
 0.464
rssA
Swarming motility regulation sensor protein RssA.
  
   0.451
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
  
 
 0.448
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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