STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narX_1Nitrate/nitrite sensor protein NarX. (586 aa)    
Predicted Functional Partners:
narL_1
Nitrate/nitrite response regulator protein NarL.
 
 0.995
narL_2
Nitrate/nitrite response regulator protein NarL.
 
 0.983
narX_2
Nitrate/nitrite sensor protein NarX.
  
  
 
0.901
degU_2
Transcriptional regulatory protein DegU.
 
 
 0.836
uhpA
Transcriptional regulatory protein UhpA.
 
 
 0.805
nreC
Oxygen regulatory protein NreC.
 
 
 0.786
uvrY
Response regulator UvrY.
 
 
 0.781
rcsB
Transcriptional regulatory protein RcsB; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
 0.721
APC13733.1
SCP-2 sterol transfer family protein.
 
     0.567
arcB_2
Aerobic respiration control sensor protein ArcB.
  
  
 0.506
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.