Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yhdGPutative amino acid permease YhdG. (496 aa)    
Predicted Functional Partners:
APC10318.1
Hypothetical protein.
  
    0.848
csgD
CsgBAC operon transcriptional regulatory protein.
 
     0.698
hpcD
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
  
     0.674
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
     0.667
fes
Enterochelin esterase.
     
 0.627
hpaR
Putative HTH-type transcriptional regulator.
  
     0.574
puuP_1
Putrescine importer PuuP.
  
     0.526
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
  
  
 0.519
hpaB
4-hydroxyphenylacetate 3-monooxygenase oxygenase component.
  
     0.456
btr
HTH-type transcriptional activator Btr.
 
   
 0.438
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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