STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
antAAnthranilate 1,2-dioxygenase large subunit; Converts carnitine to trimethylamine and malic semialdehyde. (375 aa)    
Predicted Functional Partners:
pobB
Phenoxybenzoate dioxygenase subunit beta; Converts carnitine to trimethylamine and malic semialdehyde.
 
  
 0.910
ascD_3
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
 
  
 0.805
hcr
NADH oxidoreductase hcr.
  
 0.780
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
  
 0.714
gabD
Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; Belongs to the aldehyde dehydrogenase family.
  
  
 0.650
opuD
Glycine betaine transporter OpuD; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.454
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
   
 0.454
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
 
   
 0.417
APC09938.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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