Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
fixLSensor protein FixL. (301 aa)    
Predicted Functional Partners:
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
 
 
 0.875
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 
 0.829
rcsC
Sensor histidine kinase RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 
 0.826
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 
 
 0.800
fixJ
Transcriptional regulatory protein FixJ.
   
 
 0.728
dmlR_2
HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family.
  
  
 0.668
dmlA
D-malate dehydrogenase [decarboxylating].
       0.474
cheB
Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.467
ttrS
Tetrathionate sensor histidine kinase TtrS.
   
 
 0.464
rcsD
Phosphotransferase RcsD.
   
 
 0.454
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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