STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlAD-malate dehydrogenase [decarboxylating]. (354 aa)    
Predicted Functional Partners:
ilvH
Acetolactate synthase isozyme 3 small subunit.
 
 0.973
ilvN
Acetolactate synthase isozyme 1 small subunit.
  
 0.964
ilvB
Acetolactate synthase isozyme 1 large subunit.
 
 0.949
ilvI
Acetolactate synthase isozyme 3 large subunit.
 
 0.949
ilvG_2
Acetolactate synthase isozyme 2 large subunit.
 
 0.948
ilvG_1
Acetolactate synthase isozyme 2 large subunit; Belongs to the TPP enzyme family.
 
 0.938
ilvM
Acetolactate synthase isozyme 2 small subunit.
  
 
  0.909
pflB
Formate acetyltransferase 1.
     
 0.900
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
 
 0.900
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
  
 0.861
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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