Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APC10348.1Fec operon regulator FecR. (328 aa)    
Predicted Functional Partners:
fecI
Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.973
fcuA
Ferrichrome receptor FcuA precursor.
 
 
 0.921
fhuA
Ferrichrome-iron receptor precursor.
 
 
 0.837
pupA
Ferric-pseudobactin 358 receptor precursor.
 
  
 0.787
fecA
Fe(3+) dicitrate transport protein FecA precursor.
 
 
 0.724
APC12815.1
Putative TonB-dependent receptor precursor.
 
  
 0.695
APC10350.1
Transport protein TonB.
 
  
 0.686
btuB_2
Vitamin B12 transporter BtuB.
 
  
 0.641
ptrA_1
Protease 3 precursor.
 
     0.597
APC12107.1
Putative TonB-dependent receptor precursor.
 
  
 0.587
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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