STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10348.1Fec operon regulator FecR. (328 aa)    
Predicted Functional Partners:
fecI
Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.971
fcuA
Ferrichrome receptor FcuA precursor.
 
 
 0.873
fhuA
Ferrichrome-iron receptor precursor.
 
 
 0.863
pupA
Ferric-pseudobactin 358 receptor precursor.
 
  
 0.789
APC12815.1
Putative TonB-dependent receptor precursor.
 
  
 0.691
APC10350.1
Transport protein TonB.
 
  
 0.677
fecA
Fe(3+) dicitrate transport protein FecA precursor.
 
 
 0.668
btuB_2
Vitamin B12 transporter BtuB.
 
  
 0.617
ptrA_1
Protease 3 precursor.
 
     0.597
hxuC
Heme/hemopexin utilization protein C precursor.
 
   
 0.560
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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