STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tsaA_1Putative peroxiredoxin. (200 aa)    
Predicted Functional Partners:
ahpF
Alkyl hydroperoxide reductase subunit F.
  
  
 0.831
trxB
Thioredoxin reductase.
  
 
 0.807
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.644
norV
Anaerobic nitric oxide reductase flavorubredoxin.
  
  
 0.635
APC09738.1
Hypothetical protein.
  
    0.576
bcp
Putative peroxiredoxin bcp.
 
 
 0.571
katA
Catalase; Belongs to the catalase family.
  
 
 0.554
sodC1
Superoxide dismutase [Cu-Zn] 1 precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 
 0.552
dps
DNA protection during starvation protein; Belongs to the Dps family.
  
  
 0.546
ykuV
Thiol-disulfide oxidoreductase YkuV.
  
 0.519
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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